PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11472
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 292aa    MW: 32589.4 Da    PI: 6.8925
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11472genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.44.6e-2956138366
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................s 66 
                 ++kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+ +i++l                      +
  PEQU_11472  56 VGKDRHSKVSTIKGLRDRRVRLSIPTAIQVYDLQDKLGLNQPSKVVDWLINAAQNEIDKLLPEpllpsgnsfiqfpqtdlnsN 138
                 68************************************************************955544443333322221110 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.10957115IPR017887Transcription factor TCP subgroup
PfamPF036342.9E-2757177IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MMKLYKMIKD SKVKEDQIKQ EEGGTIDYTQ HQMSKRLCSS LPNQRIARLS QSDHFVGKDR  60
HSKVSTIKGL RDRRVRLSIP TAIQVYDLQD KLGLNQPSKV VDWLINAAQN EIDKLLPEPL  120
LPSGNSFIQF PQTDLNSNSI RAQAFSANAD PFMLISNNYV DDITSFPKPT LNSFHSYYQM  180
DPYASHVGNN HSSQEVFSND FHLASASSSL SSSLTSMPAE TQIVMPSSFS SYLTGTNSIQ  240
TPSTFAELLP WNSSSINFKQ YVQQDEAARQ LVNSTVYKDS GAGYGSSAAD FF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-32plastid transcription factor 1